pyGLMdenoise

Overview

The easiest way to install pyGLMdenoise is with pip:

pip install glmdenoise

If your data is in BIDS format and you’ve preprocessed with fmriprep, you can run glmdenoise on your data as a terminal command:

glmdenoise /my/data/dir

Or try it on a public dataset by using its datalad URL:

glmdenoise ///workshops/nih-2017/ds000114

You can also use GLMdenoise directly from python:

from glmdenoise import GLMdenoise
gd = GLMdenoise()
gd.fit(design, data, tr=2.0)
gd.plot_figures()